About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13259950_13263935_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13259950 - 13263935
Intron Length:
3986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTTTTTATTT
Flanking Amino Acid:
KGKIAALDLQTQESLNPNNL
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
68.6
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89.7
25.5
Minor 5ss
31.8
-2.1
2.8
37.4
33.2
Minor BPS
57.4
0.31
1.6
70.13
42.3

Associated Gene:

Gene:
MINAR1
Ensembl Gene ID:
ENSAPLG00000015986
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016675
13259752 - 13275135
15384
ENSAPLT00000042895
13259752 - 13319561
59810
ENSAPLT00000040479
13258360 - 13274500
16141
ENSAPLT00000030794
13258360 - 13275725
17366