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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13264191_13265470_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13264191 - 13265470
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
AACCCTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAACC
Flanking Amino Acid:
NKDWHRKSKEADRQYEIPQP
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.1
0.45
0.9
62.6
37.4
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
67.1
0.52
1.4
74.34
36.6

Associated Gene:

Gene:
MINAR1
Ensembl Gene ID:
ENSAPLG00000015986
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040479
13258360 - 13274500
16141
ENSAPLT00000030794
13258360 - 13275725
17366
ENSAPLT00000016675
13259752 - 13275135
15384
ENSAPLT00000042895
13259752 - 13319561
59810