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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13267815_13274830_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13267815 - 13274830
Intron Length:
7016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CTTTTTTTGTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
74.9
0.56
1
69.5
41.6
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
44.1
-0.3
3.4
73.17
39

Associated Gene:

Gene:
MINAR1
Ensembl Gene ID:
ENSAPLG00000015986
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030794
13258360 - 13275725
17366