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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13274155_13274830_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13274155 - 13274830
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CCGCCTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
CCATGCCAACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
68.9
0.42
1
68
37.5
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
37.3
-0.8
2.3
52.53
48.1

Associated Gene:

Gene:
MINAR1
Ensembl Gene ID:
ENSAPLG00000015986
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016675
13259752 - 13275135
15384