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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13275136_13275591_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13275136 - 13275591
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTCTCCTGATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
88.5
0.87
0.8
81.2
36.5
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
56.8
0.19
1.8
66.94
44.6

Associated Gene:

Gene:
MINAR1
Ensembl Gene ID:
ENSAPLG00000015986
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030794
13258360 - 13275725
17366