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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13330825_13331910_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13330825 - 13331910
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTGTTCTAACT
Flanking Amino Acid:
FERCNMFLRDSQQRLVGLEE
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.3
0.41
0.9
62.1
34.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
52
0.14
1.8
69.91
41.6

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106