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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13333299_13333992_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13333299 - 13333992
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
AGTGCCATAACC
Flanking Amino Acid:
KKPSITLLADRPEDPNLAVT
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
71.7
36.2
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
77.5
0.62
0.9
71.4
38.4
Minor 5ss
30.6
-2.2
3.2
36.8
47.7
Minor BPS
61.1
0.33
1.8
70.87
39.9

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106