About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13334210_13334754_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13334210 - 13334754
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
AATGCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAATG
Flanking Amino Acid:
SAITIWDKHLGYPLSVTVMP
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.3
0.46
0.9
59.3
42
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
71.8
0.55
1.5
76.08
35.8

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106