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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13334881_13335182_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13334881 - 13335182
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
CCATCTTCCATC
Flanking Amino Acid:
LLNRPLKERVDADLKPDVVW
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.6
42.7
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
77
0.61
0.8
76.6
32
Minor 5ss
31.2
-2.2
3.1
31.4
42.6
Minor BPS
45
-0.4
1.9
50.43
41.2

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106