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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13335758_13335944_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13335758 - 13335944
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTTTCCTTACTT
Flanking Amino Acid:
GESESKDEVPRRAAFHFLLP
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
83.3
0.75
0.8
80.5
30.7
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
74.2
0.84
1.6
87.41
38.9

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106