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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13338042_13338940_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13338042 - 13338940
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
AGTTGCTCAACA
Flanking Amino Acid:
GGDYAGVLLQGSSEVWLEVY
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
87.7
23.4
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
76.6
0.6
0.9
71.1
33.4
Minor 5ss
22.6
-3.2
3.8
32.5
42.3
Minor BPS
57.7
0.24
2
71.18
40.6

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106