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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13339020_13339612_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13339020 - 13339612
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTTGCTTTGACG
Flanking Amino Acid:
FLLIKILNEVEDISKRSTCV
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
82.8
0.74
1
80.6
37
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
63.5
0.28
1.5
65.81
42.8

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106