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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13339678_13340314_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13339678 - 13340314
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
ATTTCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTCTTCCTATTT
Flanking Amino Acid:
HHVLLTVDEMGLVSLFCFHR
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.1
44.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.3
0.75
0.8
74.7
39.3
Minor 5ss
34.5
-1.8
3.5
39.9
46.1
Minor BPS
48.4
-0
1.9
67.42
44.2

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106