About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13341461_13341740_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13341461 - 13341740
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTTGTT
5'SS Class:
major
3'SS Sequence:
CTCATGAAAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTCCCCTTTACC
Flanking Amino Acid:
SEKLPPPSSQILCDSSFSCT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
70.2
40.2
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
53.2
0.07
1
48.6
38.2
Minor 5ss
33.7
-1.9
3.5
50
46.3
Minor BPS
68.5
0.57
1.6
76.59
39.5

Associated Gene:

Gene:
WDR93
Ensembl Gene ID:
ENSAPLG00000015832
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016503
13330707 - 13341812
11106