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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13342211_13343663_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13342211 - 13343663
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
GTGTCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
GCCACGCTAACC
Flanking Amino Acid:
LEASMSSGRKMFRLGNTVHA
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
69.1
37.3
Major BPS
57.1
0.18
1.1
59
36
Major PPT
79.7
0.67
0.9
73.4
37
Minor 5ss
35.2
-1.7
3.2
41.6
38.8
Minor BPS
43.5
-0.5
2.3
52.5
44.6

Associated Gene:

Gene:
PLIN1
Ensembl Gene ID:
ENSAPLG00000015729
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016394
13341811 - 13344391
2581