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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13342211_13349875_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13342211 - 13349875
Intron Length:
7665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
GCTTTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CAGCTCTGAACT
Flanking Amino Acid:
AGSQHELGTEERVAMTAKKN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
69.1
37.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
72.3
0.5
0.9
65.6
36.1
Minor 5ss
35.2
-1.7
3.2
41.6
38.8
Minor BPS
56.1
0.27
1.5
67.21
43.2

Associated Gene:

Gene:
PLIN1
Ensembl Gene ID:
ENSAPLG00000015729
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046161
13341806 - 13354728
12923