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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13349931_13350491_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13349931 - 13350491
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGATGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGGCCCCTAACC
Flanking Amino Acid:
NQTLQDGSAKENVLQRVLHL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
64.7
0.33
1
61.7
43.6
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
61
0.32
1.7
69.9
40.8

Associated Gene:

Gene:
PLIN1
Ensembl Gene ID:
ENSAPLG00000015729
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046161
13341806 - 13354728
12923