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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13350922_13351263_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13350922 - 13351263
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TCTTCTGCATCT
Flanking Amino Acid:
IPALQYPVEKLASELKDTIS
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
72.7
0.51
0.8
66.2
28.7
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
46.2
-0.2
2.4
71.47
45.8

Associated Gene:

Gene:
PLIN1
Ensembl Gene ID:
ENSAPLG00000015729
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046161
13341806 - 13354728
12923