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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13351517_13351731_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13351517 - 13351731
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCCCG
5'SS Class:
major
3'SS Sequence:
GCTCTGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
GGTCCCCCACCC
Flanking Amino Acid:
YLLPEEDEEADKKPKETRGP
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.2
50
46.4
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
72.9
0.52
0.9
69.5
36.8
Minor 5ss
36.9
-1.5
3.2
48.5
47.2
Minor BPS
43.2
-0.5
2.1
55.1
42.1

Associated Gene:

Gene:
PLIN1
Ensembl Gene ID:
ENSAPLG00000015729
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046161
13341806 - 13354728
12923