Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13352598_13353175_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13352598 - 13353175

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGAGA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCAGCAC

U12 Branch Point Sequence:

GTGGCCAGCACG

Flanking Amino Acid:

GKKEDSHAGEAGDGPGLVGS

Intron Amino Acid Position:

438

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

69.8

42.4

Major BPS

41.5

-0.5

1.3

37.8

Major PPT

85.1

0.79

0.7

77.1

31.6

Minor 5ss

30.6

-2.2

3.3

40.1

45.6

Minor BPS

40.2

-0.9

2.2

45.87

46.1

Associated Gene:

Gene:

PLIN1

Ensembl Gene ID:

ENSAPLG00000015729

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046161

13341806 - 13354728

12923