About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13359682_13360142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13359682 - 13360142
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
GTCTCTCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATCCTGTAACC
Flanking Amino Acid:
KTYTIGEASVAAINEDEQGI
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
66.2
39.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72
0.5
1
65.3
41.1
Minor 5ss
30.6
-2.2
2.9
38
39.8
Minor BPS
52.1
0.05
2
64.62
41.1

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748