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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13363633_13363873_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13363633 - 13363873
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAA
U12 Branch Point Sequence:
AGCTGATTAACG
Flanking Amino Acid:
WEQKQSLCQRRNGIQSWSKR
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.4
36.8
Major BPS
60.4
0.26
1.2
52.1
43.5
Major PPT
81.1
0.7
0.8
72.7
37.5
Minor 5ss
34.6
-1.8
2.8
40.9
45.4
Minor BPS
48.6
-0.2
2.1
55.73
45.1

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748