About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13363984_13364261_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13363984 - 13364261
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GAGTCCTTATCT
Flanking Amino Acid:
MQEEQLELLKEACRRRERLP
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
88.8
25.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
75.7
0.58
1
69
41.3
Minor 5ss
22.7
-3.1
3.9
34.8
41.6
Minor BPS
67.9
0.64
1.6
78.2
43.6

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748