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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13364973_13365070_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13364973 - 13365070
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CACCCCCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
GCAGTTTCACCC
Flanking Amino Acid:
RVAAAQSKAQVLCKKKQATE
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
54.7
0.11
1
49.7
33.7
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
41.3
-0.6
1.7
42.91
38.7

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748