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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13365269_13365522_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13365269 - 13365522
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CACCCCTCGAGG
Flanking Amino Acid:
EMNKRQHRVKELELKHEQHQ
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
75.7
0.58
0.8
69.8
29.9
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
42.9
-0.7
1.9
41.01
43.4

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748