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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13365649_13366070_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13365649 - 13366070
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
CTCCTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
CATGCATGAGCT
Flanking Amino Acid:
GSVISLEQQQKIEEQKKWLD
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.9
38.7
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
78.5
0.64
0.7
76.5
25.6
Minor 5ss
28.4
-2.5
3.6
38.8
46.4
Minor BPS
45.2
-0.2
2
63.44
46.1

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748