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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13367428_13367509_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13367428 - 13367509
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACCGCC
5'SS Class:
major
3'SS Sequence:
TTTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAG
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
SVQLLLQQSREHMDEGLASS
Intron Amino Acid Position:
1189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.3
56.4
44.4
Major BPS
50.2
0.01
1.5
54.7
43.1
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
43.6
-0.7
3.2
60.6
44.1
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
KIF7
Ensembl Gene ID:
ENSAPLG00000015562
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016245
13359378 - 13368125
8748