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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13369712_13370044_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13369712 - 13370044
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGGCTTTAATT
Flanking Amino Acid:
QTPPARKRAREGESDALEVM
Intron Amino Acid Position:
1919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.8
73.6
31.1
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
67.4
0.62
1.4
76
41.5

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911