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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13370156_13370766_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13370156 - 13370766
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAG
U12 Branch Point Sequence:
TGAGCTGTCAGT
Flanking Amino Acid:
MGDDDVFLLSGTTPPLKSAL
Intron Amino Acid Position:
1882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
75.9
35
Major BPS
59.9
0.25
1.6
59.3
47.1
Major PPT
78.9
0.65
0.9
69.8
41.5
Minor 5ss
29.7
-2.3
2.6
33
42
Minor BPS
38.6
-0.8
2.5
56.48
46.2

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911