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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13373054_13373236_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13373054 - 13373236
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAA
U12 Branch Point Sequence:
CAAGGCTGATTC
Flanking Amino Acid:
LNLEELTACQTPRKTPHKST
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
53.4
0.08
1
50.7
34.3
Major PPT
79.7
0.67
0.7
73.5
24.7
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
38.6
-0.8
1.9
40.72
39.4

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911