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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13375147_13375623_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13375147 - 13375623
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GTTTTTTTAAAG
Flanking Amino Acid:
RRLLHRQIKGRSSDPGCDTS
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
80.7
0.69
1
82.2
33.3
Minor 5ss
30.1
-2.3
2.6
34.2
41.4
Minor BPS
66.8
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911