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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13375715_13376197_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13375715 - 13376197
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTCAT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
KYKCSDEGAKDHHKLLTKRV
Intron Amino Acid Position:
964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
68.8
43.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
34.1
-1.8
3.2
40.9
45.4
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911