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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13376339_13377046_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13376339 - 13377046
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGA
5'SS Class:
major
3'SS Sequence:
TCTTGCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATCTGATCA
Flanking Amino Acid:
QMPLQKEAVQEVTKVRRNLF
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.8
0.65
0.8
72.3
32.5
Minor 5ss
45
-0.5
2.6
58.5
46
Minor BPS
50.9
0.02
1.7
65.83
40.1

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911