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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13378220_13378512_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13378220 - 13378512
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTGATGCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTTATTTGATG
Flanking Amino Acid:
LTKFLEEILDLYMNSIPKTL
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
59.6
0.22
1
51.9
42.5
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
57.1
0.08
1.6
62.7
40

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911