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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13380716_13381431_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13380716 - 13381431
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TGTTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTTGGTGGAACT
Flanking Amino Acid:
TAGPGNNRKRRGVPRTPVRQ
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.4
41.9
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
46.8
-0.3
2.5
58.8
39.3
Minor BPS
44.5
-0.3
2.5
71.98
45.3

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911