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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13382479_13382927_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13382479 - 13382927
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
MSTEDSLASTEESPVPEWVQ
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.2
39.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.5
0.73
0.9
81
36.6
Minor 5ss
40.9
-1
3.7
63.6
48.1
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
TICRR
Ensembl Gene ID:
ENSAPLG00000015247
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015912
13369593 - 13386503
16911