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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13390629_13393857_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13390629 - 13393857
Intron Length:
3229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
CCTCTCAGAGCT
Flanking Amino Acid:
IENDFYFRYPSFQDVHVMIF
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
68.4
0.41
1
63
37.2
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
42.9
-0.4
1.9
58.84
44

Associated Gene:

Gene:
RHCG
Ensembl Gene ID:
ENSAPLG00000014860
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015505
13390418 - 13398261
7844