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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13394045_13394281_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13394045 - 13394281
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TCCCGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATTTCCTTACTA
Flanking Amino Acid:
QNGKILIGVENLINADFCVG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
80.4
0.68
0.8
71.8
38.1
Minor 5ss
33.3
-1.9
3.2
39.9
40.2
Minor BPS
74.1
0.75
1.5
81.61
33.9

Associated Gene:

Gene:
RHCG
Ensembl Gene ID:
ENSAPLG00000014860
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015505
13390418 - 13398261
7844