Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13394433_13394561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13394433 - 13394561

Intron Length:

129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGGCTT

5'SS Class:

major

3'SS Sequence:

CCCTCGGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

AATTCCAAAATG

Flanking Amino Acid:

NEYILLNLLHVKDAGGSMTI

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.3

73.4

43.3

Major BPS

58.9

0.22

49.8

35.1

Major PPT

0.41

0.9

60.5

35.3

Minor 5ss

38.1

-1.3

3.5

55.8

Minor BPS

49.7

-0.1

60.05

41.8

Associated Gene:

Gene:

RHCG

Ensembl Gene ID:

ENSAPLG00000014860

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015505

13390418 - 13398261

7844