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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13394710_13395118_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13394710 - 13395118
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCCACCCCGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TCCTCCCCACCC
Flanking Amino Acid:
VYHSDLFAMIGTLYLWMYWP
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.3
42.2
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
58.7
0.2
1
50
34
Minor 5ss
28.6
-2.5
2.8
33
41.8
Minor BPS
45.8
-0.3
2.1
59.17
45.8

Associated Gene:

Gene:
RHCG
Ensembl Gene ID:
ENSAPLG00000014860
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015505
13390418 - 13398261
7844