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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13396588_13397146_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13396588 - 13397146
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CAATCCTCACCA
Flanking Amino Acid:
AATEDVYGKEGFIKAFDFTG
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
75.7
0.58
0.8
69.2
31.1
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
51.3
0.04
1.9
61.81
43.9

Associated Gene:

Gene:
RHCG
Ensembl Gene ID:
ENSAPLG00000014860
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015505
13390418 - 13398261
7844