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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13491177_13491648_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13491177 - 13491648
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCATGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTCCCCATGATC
Flanking Amino Acid:
KAAFQIRQFQRSLVNQFSSA
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
63.4
0.3
1
62.3
37.5
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
49.9
-0
1.6
59.94
39.7

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148