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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13494808_13494902_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13494808 - 13494902
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATCAG
5'SS Class:
major
3'SS Sequence:
CTCTACCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCCTCTACCT
Flanking Amino Acid:
IKSELEDFELDKSADFSLSS
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
63.9
41.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72
0.5
0.8
69.5
30.8
Minor 5ss
33.1
-1.9
3
37.5
41.4
Minor BPS
56.7
0.29
2
82.08
39.3

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148