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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13496010_13497257_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13496010 - 13497257
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
SSIMETLLSQIKQYYLPQPD
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.2
0.66
1
76.8
37.3
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148