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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13497327_13498432_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13497327 - 13498432
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TGTCAAGTAAGC
Flanking Amino Acid:
QADVRLMLYEGFYDVLRRNS
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
83
0.74
0.8
80.5
31.5
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
39.7
-0.8
2.4
55.02
42.4

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148