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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13500006_13500679_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13500006 - 13500679
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTATAT
U12 Branch Point Sequence:
TTCTCTCCAAAG
Flanking Amino Acid:
TVQGLLRAVQPLLKVSMSVR
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
55.3
0.13
1.2
52.8
42.9
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
46.9
-0.3
2
57.57
43.9

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148