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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13500811_13501350_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13500811 - 13501350
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAGGA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTCATTTTATT
Flanking Amino Acid:
KAASPVSHFIDLLSNIVVSA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
66.1
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
35.3
-1.7
3.4
47.8
47.6
Minor BPS
49.8
0.06
1.8
71.17
39.5

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148