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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13502198_13503187_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13502198 - 13503187
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTTTTCTGATCT
Flanking Amino Acid:
TAVILEVVKNSAFGWDHVTQ
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.7
0.62
0.9
70
40.8
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
61.1
0.43
1.8
80.23
41.8

Associated Gene:

Gene:
FANCI
Ensembl Gene ID:
ENSAPLG00000004948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005210
13490985 - 13508132
17148