Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_13505974_13506548_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13505974 - 13506548

Intron Length:

575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTACGTACC

5'SS Class:

major

3'SS Sequence:

TTTGTTTTGTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTCCAC

U12 Branch Point Sequence:

TTCCACTCAGTT

Flanking Amino Acid:

KQLINTLCSSKWDPQSVIHL

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

72.7

36.9

Major BPS

55.1

0.13

1.3

67.8

38.2

Major PPT

83.6

0.76

0.9

84.6

Minor 5ss

37.6

-1.4

2.9

46.8

35.3

Minor BPS

46.7

-0.1

1.9

66.92

43.7

Associated Gene:

Gene:

FANCI

Ensembl Gene ID:

ENSAPLG00000004948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017528

13504153 - 13508132

3980

ENSAPLT00000005210

13490985 - 13508132

17148