Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1350990_1352818_F

Intron Information:

Intron Rank:

128205

Intron Class:

major

Intron Phase:

Intron Coordinates:

1350990 - 1352818

Intron Length:

1829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGGACA

5'SS Class:

strong_major

3'SS Sequence:

CCCTTCTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATAAAT

U12 Branch Point Sequence:

ATTTCTGTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

72.3

Major BPS

56.8

0.17

1.2

65.3

38.6

Major PPT

68.5

0.42

0.8

62.5

33.3

Minor 5ss

31.2

-2.2

3.3

40.2

45.7

Minor BPS

55.6

0.26

2.2

81.74

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019039

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035029

1350140 - 1353338

3199